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Species	Data Source	Version	Download Date
Arabidopsis thaliana	CapitalBio
	TRANSFAC	10.3
	TAIR	7
	UniProt		20090422
	EPD	100
	Gene Ontology		20090427
	KEGG	50
	NCBI		20090210
	miRBase	13
	GenMAPP		20060518
Caenorhabditis elegans	CapitalBio
	TRANSFAC	10.3
	UniProt		20090616
	EPD	100
	Gene Ontology		200903
	KEGG	50
	NCBI		20090616
	miRBase	13
	WormBase	ws202
	GenMAPP		200906
Drosophila melanogaster (Fruitfly)	CapitalBio
	TRANSFAC	10.3
	UniProt		20060516
	EPD	100
	FlyBase		20070405
	Gene Ontology		20070322
	KEGG	38
	NCBI		20070306
	miRBase	13
	GenMAPP		20060518
Homo sapiens (Human)	CapitalBio
	TRANSFAC	10.3
	UniProt		200906
	Ensembl	54
	EPD	100
	Gene Ontology		200906
	KEGG	50
	NCBI		200902
	IntAct		200908
	miRBase	13
	DIP		200908
	MINT		200908
	GenMAPP		200906
	Biocarta		200906
	HUGO		200906
	HPRD		200908
Mus musculus (Mouse)	CapitalBio
	TRANSFAC	10.3
	UniProt		20090212
	Ensembl	52
	EPD	100
	Gene Ontology		20090220
	KEGG	50
	MGI		20090210
	NCBI		20090210
	miRBase	13
	GenMAPP		20060518
	Biocarta		20050923
Oryza sativa (Rice)	IRGSP
	CapitalBio
	TRANSFAC	10.3
	UniProt		20060516
	EPD	100
	Gene Ontology		20090220
	KEGG		38
	NCBI		20070306
	TIGR		20070123
	miRBase	13
	GenMAPP		20060518
Rattus norvegicus (Rat)	RGD
	CapitalBio
	TRANSFAC	10.3
	UniProt		20090212
	Ensembl	54
	EPD	100
	Gene Ontology		20090521
	KEGG		50
	NCBI		20090210
	miRBase	13
	GenMAPP		200906
Danio rerio (Zebrafish)	CapitalBio
	UniProt		20090212
	Ensembl	53
	Gene Ontology		20090109
	KEGG		49
	NCBI		20090207
	miRBase	13
	ZFIN		20090305
Zea mays (Maize)	CapitalBio
	TRANSFAC	10.3
	UniProt		20060516
	EPD	100
	Gene Ontology		20060601
	KEGG	49
	NCBI		20070306
	miRBase	13
	TIGR	ZMGI.release_16
	GenMAPP		20060518
Medicago truncatula	CapitalBio
	UniProt		20080409
	Gene Ontology		20080414
	KEGG	46
	NCBI		20080129
	miRBase	13
	TIGR	8
Glycine max (Soybean)	CapitalBio
	UniProt		20090212
	EPD	100
	Gene Ontology		20090109
	KEGG	49
	NCBI		20090207
	miRBase	13
Sus scrofa (Pig)	CapitalBio
	UniProt		20060516
	EPD	100
	Gene Ontology		20070322
	KEGG	38
	NCBI		20070306
	miRBase	13
Macaca mulatta (Rhesus Monkey)	CapitalBio
	UniProt
	Ensembl	46
	Gene Ontology		20070322
	KEGG	44
	NCBI		20070904
	miRBase	13
	GenMAPP		20060518
Bos taurus (Cow)	CapitalBio
	UniProt		20090212
	Ensembl	53
	EPD	100
	Gene Ontology		20090109
	KEGG	49
	NCBI		20090207
	miRBase	13
Saccharomyces cerevisiae (Yeast)	CapitalBio
	TRANSFAC	10.3
	UniProt		20060516
	Gene Ontology		20070322
	KEGG	38
	SGD		20070326
	NCBI		20070306
	GenMAPP		20060518
Populus (Poplars)	CapitalBio
	Gene Ontology		20070322
	KEGG	38
	JGI	1.1
	NCBI		20070306
Solanum lycopersicum (Tomato)	CapitalBio
	UniProt		200906
	Gene Ontology		200906
	KEGG	50
	NCBI		200906
	miRBase	13
Escherichia coli (Ecoli)	CapitalBio
	UniProt		20060516
	Gene Ontology		20070322
	KEGG	44
	NCBI		20070904
	ASAP		20070420
Bombyx mori (Domestic silkworm)	CapitalBio
	UniProt		200906
	EPD	100
	Gene Ontology		200906
	KEGG	50
	NCBI		20090210
	miRBase	13
	SilkDB		200906
Sinorhizobium meliloti	lipm-bioinfo.toulouse.inra.fr
	CapitalBio
	UniProt		20070821
	Gene Ontology		20070322
	KEGG	44
	NCBI		20070904
	TIGR CMR	LGI.release_11
Gallus gallus (chicken)	NCBI		201002
	KEGG	50
	Gene Ontology		201002
	Ensembl	56	201002
	UniProt		201002
	CapitalBio
	GenMAPP		200906
	miRBase	13